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심상희 교수

Sang Hee Shim

서울대학교 의약학과 · 생화학·유전·분자생물학

연구실 소개

심상희 교수의 연구실은 생체막 구조와 동적 거동을 나노미터 해상도로 실시간 관찰하는 초해상도 현미경 기술을 핵심으로 하며, 특히 생체 내 세포 소기관의 막 구조를 고해상도로 시각화하는 데에 기여하고 있습니다. 또한 중적외선 영역에서 펄스를 정밀하게 조작할 수 있는 고성능 아コース틱 옵티컬 모듈레이터를 개발하여 2D 적외선 스펙트로스코피를 활용한 분자 구조 및 동역학 분석 기법을 선도하고 있습니다. 이는 단백질 응집, 아밀로이드 형성 메커니즘 등 생물학적 병변의 핵심 메커니즘 규명에 기여하고 있습니다.

초해상도 현미경2D 적외선 스펙트로스코피중적외선 펄스 조작생체막 동역학아밀로이드 형성

연구 현황

논문 수
96
총 인용 수
4,638
최근 5년 논문
22
주요 분야
생화학·유전·분자생물학

연구 성과 추이

표시된 성과는 수집된 데이터 기준으로 산출되며, 일부 차이가 있을 수 있습니다.

5개년 연도별 논문 게재 수
22총합
2022
2023
2024
2025
2026
5개년 연도별 피인용 수
192총합
20222023202420252026

주요 논문

15
1
논문|인용수 522·2012
Super-resolution fluorescence imaging of organelles in live cells with photoswitchable membrane probes
Sang‐Hee Shim, Chenglong Xia, Guisheng Zhong, Hazen P. Babcock, Joshua C. Vaughan, Bo Huang, Xun Wang, Cheng Xu, Guo‐Qiang Bi, Xiaowei Zhuang
SJR Q1Proceedings of the National Academy of Sciences

Imaging membranes in live cells with nanometer-scale resolution promises to reveal ultrastructural dynamics of organelles that are essential for cellular functions. In this work, we identified photoswitchable membrane probes and obtained super-resolution fluorescence images of cellular membranes. We demonstrated the photoswitching capabilities of eight commonly used membrane probes, each specific to the plasma membrane, mitochondria, the endoplasmic recticulum (ER) or lysosomes. These small-mole

BiophysicsBiochemistry, Genetics and Molecular Biology
2
리뷰|인용수 428·2008
How to turn your pump–probe instrument into a multidimensional spectrometer: 2D IR and Vis spectroscopiesvia pulse shaping
Sang‐Hee Shim, Martin T. Zanni
SJR Q2Physical Chemistry Chemical PhysicsOA

We have recently developed a new and simple way of collecting 2D infrared and visible spectra that utilizes a pulse shaper and a partly collinear beam geometry. 2D IR and Vis spectroscopies are powerful tools for studying molecular structures and their dynamics. They can be used to correlate vibrational or electronic eigenstates, measure energy transfer rates, and quantify the dynamics of lineshapes, for instance, all with femtosecond time-resolution. As a result, they are finding use in systems

Atomic and Molecular Physics, and OpticsPhysics and Astronomy
3
논문|인용수 320·2007
Automated 2D IR spectroscopy using a mid-IR pulse shaper and application of this technology to the human islet amyloid polypeptide
Sang‐Hee Shim, David B. Strasfeld, Yun L. Ling, Martin T. Zanni
SJR Q1Proceedings of the National Academy of SciencesOA

The capability of 2D IR spectroscopy to elucidate time-evolving structures is enhanced by a programmable mid-IR pulse shaper that greatly improves the ease, speed, and accuracy of data collection. Traditional ways of collecting 2D IR spectra are difficult to implement, cause distorted peak shapes, and result in poor time resolution and/or phase problems. We report on several methods for collecting 2D IR spectra by using a computer-controlled germanium acoustooptic modulator that overcomes the ab

Atomic and Molecular Physics, and OpticsPhysics and Astronomy
4
논문|인용수 290·2009
Two-dimensional IR spectroscopy and isotope labeling defines the pathway of amyloid formation with residue-specific resolution
Sang‐Hee Shim, Ruchi Gupta, Yun L. Ling, David B. Strasfeld, Daniel P. Raleigh, Martin T. Zanni
SJR Q1Proceedings of the National Academy of SciencesOA

There is considerable interest in uncovering the pathway of amyloid formation because the toxic properties of amyloid likely stems from prefibril intermediates and not the fully formed fibrils. Using a recently invented method of collecting 2-dimensional infrared spectra and site-specific isotope labeling, we have measured the development of secondary structures for 6 residues during the aggregation process of the 37-residue polypeptide associated with type 2 diabetes, the human islet amyloid po

PhysiologyMedicine
5
논문|인용수 153·2006
Femtosecond pulse shaping directly in the mid-IR using acousto-optic modulation
Sang‐Hee Shim, David B. Strasfeld, Eric C. Fulmer, Martin T. Zanni
SJR Q1Optics Letters

Pulse shaping directly in the mid-IR is accomplished by using a germanium acousto-optic modulator (Ge AOM) capable of programmable phase and amplitude modulation for IR light between 2 and 18 microm. Shaped waveforms centered at 4.9 microm are demonstrated in both the frequency and the time domains. With a 50% throughput efficiency, the Ge AOM can generate much more intense pulses with higher resolution than can indirect shaping methods. Furthermore, the phase stability of the shaped pulse prove

Atomic and Molecular Physics, and OpticsPhysics and Astronomy
6
논문|인용수 101·2006
Generation and characterization of phase and amplitude shaped femtosecond mid-IR pulses
Sang‐Hee Shim, David B. Strasfeld, Martin T. Zanni
SJR Q1Optics ExpressOA

A germanium acousto-optic modulator was recently reported (Shim et al., Optics Letters, 31, 838, 2006) that is capable of generating phase and amplitude shaped femtosecond pulses directly in the mid-infrared. In this paper, the design, implementation and performance of this novel mid-IR shaper is described in detail as is the sub-50 fs optical parametric amplifier that provides large bandwidth for generation of complex pulse shapes. These details include the acoustic power and wavelength depende

Atomic and Molecular Physics, and OpticsPhysics and Astronomy
7
리뷰|인용수 71·2022
Bleaching‐Resistant Super‐Resolution Fluorescence Microscopy
Jiwoong Kwon, Mohamed Saleh Elgawish, Sang‐Hee Shim
SJR Q1Advanced ScienceOA

Photobleaching is the permanent loss of fluorescence after extended exposure to light and is a major limiting factor in super-resolution microscopy (SRM) that restricts spatiotemporal resolution and observation time. Strategies for preventing or overcoming photobleaching in SRM are reviewed developing new probes and chemical environments. Photostabilization strategies are introduced first, which are borrowed from conventional fluorescence microscopy, that are employed in SRM. SRM-specific strate

BiophysicsBiochemistry, Genetics and Molecular Biology
8
논문|인용수 53·2017
Selective Suppression of Stimulated Raman Scattering with Another Competing Stimulated Raman Scattering
Doyeon Kim, Dae Sik Choi, Jiwoong Kwon, Sang‐Hee Shim, Hanju Rhee, Minhaeng Cho
SJR Q1The Journal of Physical Chemistry Letters

A three-beam femtosecond stimulated Raman scattering (SRS) scheme is formulated and demonstrated to simultaneously induce two different SRS processes associated with Raman-active modes in the same molecule. Two SR gains involving a common pump pulse are coupled and compete: As one of the Stokes beam intensities increases, the other SRS is selectively suppressed. We provide theoretical description and experimental evidence that the selective suppression behavior is due to the limited number of pu

BiophysicsBiochemistry, Genetics and Molecular Biology
9
논문|인용수 37·2016
Interrogating Surface Functional Group Heterogeneity of Activated Thermoplastics Using Super-Resolution Fluorescence Microscopy
Colleen O'Neil, Joshua M. Jackson, Sang‐Hee Shim, Steven A. Soper
SJR Q1Analytical ChemistryOA

We present a novel approach for characterizing surfaces utilizing super-resolution fluorescence microscopy with subdiffraction limit spatial resolution. Thermoplastic surfaces were activated by UV/O3 or O2 plasma treatment under various conditions to generate pendant surface-confined carboxylic acids (-COOH). These surface functional groups were then labeled with a photoswitchable dye and interrogated using single-molecule, localization-based, super-resolution fluorescence microscopy to elucidat

Biomedical EngineeringEngineering
10
논문|인용수 35·2005
Norditerpenoid Alkaloids and Other Components from the Processed Tubers ofAconitum carmichaeli
심상희, So Young Lee, Ju Sun Kim, 손건호, 강삼식

A new norditerpenoid and a known alkaloid were isolated from the alkaloidal fraction of the processed tubers of Aconitum carmichaeli. The structure of the new norditerpenoid alkaloid was elucidated as lipoforesaconitine (1) on the basis of spectroscopic analysis. The known norditerpenoid alkaloid was characterized as lipoyunanaconitine (2). In addition, a new flavonoid, 6''-O-acetylliquiritin (7), along with a known ceramide, (2S,3S,4R,8E)-2-[(2'R)-2'- hydroxylignoceroylamino]-8(E)-octadecene-1,

11
논문|인용수 25·2003
Dual stacking of unbuffered saline samples, transient isotachophoresis plus induced pH junction focusing
Sang‐Hee Shim, Asif Riaz, Kihwan Choi, Doo Soo Chung
SJR Q2Electrophoresis

A dual stacking mechanism based on transient isotachophoresis (TITP) and induced pH junction focusing is demonstrated as a means to increase the concentration sensitivity in capillary electrophoresis of highly saline samples. When stacking was carried out with an unbuffered saline sample of fluorescein between two zones of low mobility background electrolyte at high pH under an electric field of reverse polarity, two transient peaks at both boundaries of the sample zone were observed. One peak a

Biomedical EngineeringEngineering
12
논문|인용수 23·2023
Label-free adaptive optics single-molecule localization microscopy for whole zebrafish
Sanghyeon Park, Yonghyeon Jo, Minsu Kang, Jin Hee Hong, Sangyoon Ko, Suhyun Kim, Sangjun Park, Hae‐Chul Park, Sang‐Hee Shim, Wonshik Choi
SJR Q1Nature CommunicationsOA

Specimen-induced aberration has been a major factor limiting the imaging depth of single-molecule localization microscopy (SMLM). Here, we report the application of label-free wavefront sensing adaptive optics to SMLM for deep-tissue super-resolution imaging. The proposed system measures complex tissue aberrations from intrinsic reflectance rather than fluorescence emission and physically corrects the wavefront distortion more than three-fold stronger than the previous limit. This enables us to

BiophysicsBiochemistry, Genetics and Molecular Biology
13
논문|인용수 23·2020
Green-, Red-, and Near-Infrared-Emitting Polymer Dot Probes for Simultaneous Multicolor Cell Imaging with a Single Excitation Wavelength
Ji‐Eun Jeong, Mohammad Afsar Uddin, Hwa Sook Ryu, Hee-Chang Kim, Minsu Kang, Joonyoung F. Joung, Sungnam Park, Sang‐Hee Shim, Han Young Woo
SJR Q1Chemistry of Materials

We report newly synthesized fluorescence resonance energy transfer (FRET)-based green-, red-, and near-infrared (NIR)-emitting polymer dot (Pdot) probes. Fluorescent Pdots (∼60 nm) were prepared with a green-emissive conjugated polymer (PPDT-P, donor) alone or mixing the donor with a red- or NIR-emitting fluorophore (T-DCS or ITIC, acceptor), where an optically inert matrix polymer [poly(styrene-co-maleic anhydride)] was mixed together to minimize the aggregation-caused quenching by diluting the

Materials ChemistryMaterials Science
14
논문|인용수 23·2019
Amplified Expansion Stimulated Emission Depletion Microscopy
Doyeon Kim, Taeyeon Kim, Jooyong Lee, Sang‐Hee Shim
SJR Q1ChemBioChem

Abstract Expansion microscopy (ExM) enhances spatial resolution by using a swellable polymer that expands the sample volume by a factor of ≈4 in one dimension and a factor of ≈64 in volume. Combining ExM with stimulated emission depletion (STED) microscopy, referred to as ExSTED, increases the resolution to up to 10 nm. However, photobleaching is a critical issue in ExSTED because the sample expansion lowers the fluorophore density whereas high‐resolution STED requires high depletion intensity.

BiophysicsBiochemistry, Genetics and Molecular Biology
15
논문|인용수 19·2010
Control Efficacy of Phloretin Isolated from Apple Fruits Against Several Plant Diseases
Sang‐Hee Shim, Su-Jung Jo, Jin-Cheol Kim, Gyung‐Ja Choi
SJR Q1The Plant Pathology JournalOA

In the course of a searching natural antifungal compounds from plant sources, we found that the methanol extract (<TEX>$3,000\;{\mu}g/ml$</TEX>) of Malus domestica fruits had potential of control against rice blast (Magnaporthe grisea) and tomato late blight (Phytophthora infestans). Under bioassay-guided purification, we isolated phloretin, a phenolic compound, with in vivo antifungal activity against M. grisea. By 1-day protective application of phloretin (<TEX>$500\;{\mu}g/ml$</TEX>), the com

Cell BiologyBiochemistry, Genetics and Molecular Biology

대표 연구 분야

BiophysicsMolecular BiologyAtomic and Molecular Physics, and OpticsPublic Health, Environmental and Occupational HealthBiomedical EngineeringCell Biology

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