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석영재 교수

Young-jae Seok

서울대학교 생명과학부 · 생화학·유전·분자생물학

연구실 소개

석영재 교수의 연구실은 대장균을 중심으로 박테리아의 대사 조절 메커니즘을 규명하는 데 초점을 맞추고 있습니다. 특히 인산염 전달계(PTS)를 통한 탄소원 조절, (p)ppGpp 등 생존 관련 신호 분자의 조절 메커니즘, 그리고 단백질 간 상호작용을 분석하는 표면 플라즈몬 공명(SPR) 기반의 리간드 피싱 기술을 핵심 도구로 활용하고 있습니다. 이와 함께 신규 조절 단백질의 기능 규명을 통해 세균의 대사 전환과 스트레스 적응 메커니즘을 밝히는 데 기여하고 있습니다.

PTS 시스템대사 조절(p)ppGpp 조절단백질 상호작용리간드 피싱

연구 현황

논문 수
145
총 인용 수
3,961
최근 5년 논문
25
주요 분야
생화학·유전·분자생물학

연구 성과 추이

표시된 성과는 수집된 데이터 기준으로 산출되며, 일부 차이가 있을 수 있습니다.

5개년 연도별 논문 게재 수
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2021
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2025
5개년 연도별 피인용 수
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주요 논문

15
1
논문|인용수 124·2006
In Vitro Reconstitution of Catabolite Repression in Escherichia coli
Young‐Ha Park, Byeong R. Lee, Yeong‐Jae Seok, Alan Peterkofsky
SJR Q1Journal of Biological ChemistryOA

A widely accepted model for catabolite repression posits that phospho-IIAGlc of the bacterial phosphotransferase system activates adenylyl cyclase (AC) activity. For many years, attempts to observe such regulatory properties of AC in vitro have been unsuccessful. To further study the regulation, AC was produced fused to the transmembrane segments of the serine chemoreceptor Tsr. Cells harboring Tsr-AC and normal AC, expressed from the cya promoter on a low copy number vector, exhibit similar beh

Molecular BiologyBiochemistry, Genetics and Molecular Biology
2
논문|인용수 114·2001
The Escherichia coli glucose transporter enzyme IICBGlc recruits the global repressor Mlc
Tae‐Wook Nam, S. H. Cho, Dongwoo Shin, Ja-Hee Kim, Jin Young Jeong, Joon-Hee Lee, Jung‐Hye Roe, Alan Peterkofsky, Sa‐Ouk Kang, Sangryeol Ryu, Yeong‐Jae Seok
SJR Q1The EMBO JournalOA
GeneticsBiochemistry, Genetics and Molecular Biology
3
논문|인용수 90·1997
High Affinity Binding and Allosteric Regulation ofEscherichia coli Glycogen Phosphorylase by the Histidine Phosphocarrier Protein, HPr
Yeong‐Jae Seok, Melissa Sondej, Paul Badawi, Marc S. Lewis, Murray C. Briggs, Howard Jaffe, Alan Peterkofsky
SJR Q1Journal of Biological ChemistryOA

The histidine phosphocarrier protein (HPr) is an essential element in sugar transport by the bacterial phosphoenolpyruvate:sugar phosphotransferase system. Ligand fishing, using surface plasmon resonance, was used to show the binding of HPr to a nonphosphotransferase protein in extracts of Escherichia coli; the protein was subsequently identified as glycogen phosphorylase (GP). The high affinity (association constant approximately 10(8) M-1), species-specific interaction was also demonstrated in

GeneticsBiochemistry, Genetics and Molecular Biology
4
논문|인용수 69·2004
A Novel Fermentation/Respiration Switch Protein Regulated by Enzyme IIAGlc in Escherichia coli
Byoung‐Mo Koo, Mi–Jeong Yoon, Chang‐Ro Lee, Tae‐Wook Nam, Young‐Jun Choe, Howard Jaffe, Alan Peterkofsky, Yeong‐Jae Seok
SJR Q1Journal of Biological ChemistryOA

The bacterial phosphoenolpyruvate:sugar phosphotransferase system regulates a variety of physiological processes as well as effecting sugar transport. The crr gene product (enzyme IIAGlc (IIAGlc)) mediates some of these regulatory phenomena. In this report, we characterize a novel IIAGlc-binding protein from Escherichia coli extracts, discovered using ligand-fishing with surface plasmon resonance spectroscopy. This protein, which we named FrsA (fermentation/respiration switch protein), is the 47

Materials ChemistryMaterials Science
5
논문|인용수 67·2018
Rsd balances (p)ppGpp level by stimulating the hydrolase activity of SpoT during carbon source downshift in Escherichia coli
Jae Wook Lee, Young‐Ha Park, Yeong‐Jae Seok
SJR Q1Proceedings of the National Academy of SciencesOA

Significance Most bacteria accumulate the molecular alarmone (p)ppGpp to divert resources away from growth and division toward biosynthesis under various nutrient limitations. Despite its crucial role, uncontrolled accumulation of this alarmone causes severe growth inhibition and cell death. Thus, fine-tuning the cellular (p)ppGpp level is required to ensure survival and adaptation under harsh nutritional conditions. Here, we identify Rsd as a stimulator of the (p)ppGpp-degrading activity of Spo

GeneticsBiochemistry, Genetics and Molecular Biology
6
논문|인용수 67·2013
Reciprocal regulation of the autophosphorylation of enzyme I Ntr by glutamine and α‐ketoglutarate in E scherichia coli
Chang‐Ro Lee, Young‐Ha Park, Miri Kim, Yeon‐Ran Kim, Soyoung Park, Alan Peterkofsky, Yeong‐Jae Seok
SJR Q1Molecular MicrobiologyOA

In addition to the phosphoenolpyruvate:sugar phosphotransferase system (sugar PTS), most proteobacteria possess a paralogous system (nitrogen phosphotransferase system, PTS(Ntr)). The first proteins in both pathways are enzymes (enzyme I(sugar) and enzyme I(Ntr)) that can be autophosphorylated by phosphoenolpyruvate. The most striking difference between enzyme I(sugar) and enzyme I(Ntr) is the presence of a GAF domain at the N-terminus of enzyme I(Ntr). Since the PTS(Ntr) was identified in 1995,

Materials ChemistryMaterials Science
7
논문|인용수 56·2005
Requirement of the dephospho‐form of enzyme IIANtr for derepression of Escherichia coli K‐12 ilvBN expression
Chang‐Ro Lee, Byoung‐Mo Koo, S. H. Cho, Yu‐Jung Kim, Mi–Jeong Yoon, Alan Peterkofsky, Yeong‐Jae Seok
SJR Q1Molecular MicrobiologyOA

While the proteins of the phosphoenolpyruvate:carbohydrate phosphotransferase system (carbohydrate PTS) have been shown to regulate numerous targets, little such information is available for the nitrogen-metabolic phosphotransferase system (nitrogen-metabolic PTS). To elucidate the physiological role of the nitrogen-metabolic PTS, we carried out phenotype microarray (PM) analysis with Escherichia coli K-12 strain MG1655 deleted for the ptsP gene encoding the first enzyme of the nitrogen-metaboli

Materials ChemistryMaterials Science
8
논문|인용수 56·2004
Expression of ptsG Encoding the Major Glucose Transporter Is Regulated by ArcA in Escherichia coli
Jin Young Jeong, You-Jin Kim, Nam-Wook Cho, Dongwoo Shin, Tae‐Wook Nam, Sangryeol Ryu, Yeong‐Jae Seok
SJR Q1Journal of Biological ChemistryOA

Because the phosphoenolpyruvate:sugar phosphotransferase system plays multiple regulatory roles in addition to the phosphorylation-coupled transport of many sugars in bacteria, synthesis of its protein components is regulated in a highly sophisticated way. Thus far, the cAMP receptor protein (CRP) complex and Mlc are known to be the major regulators of ptsHIcrr and ptsG expression in response to the availability of carbon sources. In this report, we performed ligand fishing experiments by using

GeneticsBiochemistry, Genetics and Molecular Biology
9
논문|인용수 53·2019
Determination of protein phosphorylation by polyacrylamide gel electrophoresis
Chang‐Ro Lee, Young‐Ha Park, Huitae Min, Yeon-Ran Kim, Yeong‐Jae Seok
SJR Q2The Journal of Microbiology

Phosphorylation is the most important modification for protein regulation; it controls many signal transduction pathways in all organisms. While several tools to detect phosphorylated proteins have been developed to study a variety of basic cellular processes involving protein phosphorylation, these methods have several limitations. Many proteins exhibit a phosphorylation-dependent electrophoretic mobility shift (PDEMS) in sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), and

SpectroscopyChemistry
10
논문|인용수 51·2010
Potassium mediates Escherichia coli enzyme IIANtr‐dependent regulation of sigma factor selectivity
Chang‐Ro Lee, S. H. Cho, Hyun‐Jin Kim, Miri Kim, Alan Peterkofsky, Yeong‐Jae Seok
SJR Q1Molecular MicrobiologyOA

An Escherichia coli mutant devoid of enzyme IIA(Ntr) (EIIA(Ntr) ) of the nitrogen PTS is extremely sensitive to leucine-containing peptides due to decreased expression of acetohydroxy acid synthase. This decreased expression is due to defective potassium homeostasis. We further elucidate here the mechanism for regulation of gene expression by the intracellular level of K(+) . The leucine hypersensitivity of a ptsN (encoding EIIA(Ntr) ) mutant was suppressed by deleting rpoS, encoding the station

GeneticsBiochemistry, Genetics and Molecular Biology
11
논문|인용수 38·2017
The general PTS component HPr determines the preference for glucose over mannitol
Mangyu Choe, Young‐Ha Park, Chang‐Ro Lee, Yeon-Ran Kim, Yeong‐Jae Seok
SJR Q1Scientific ReportsOA

Abstract Preferential sugar utilization is a widespread phenomenon in biological systems. Glucose is usually the most preferred carbon source in various organisms, especially in bacteria where it is taken up via the phosphoenolpyruvate:sugar phosphotransferase system (PTS). The currently proposed model for glucose preference over non-PTS sugars in enteric bacteria including E. coli is strictly dependent on the phosphorylation state of the glucose-specific PTS component, enzyme IIA Glc (EIIA Glc

GeneticsBiochemistry, Genetics and Molecular Biology
12
논문|인용수 38·1996
Importance of the carboxyl-terminal domain of enzyme I of the Escherichia coli phosphoenolpyruvate: sugar phosphotransferase system for phosphoryl donor specificity.
Yeong‐Jae Seok, B R Lee, Peng‐Peng Zhu, Alan Peterkofsky
SJR Q1Proceedings of the National Academy of SciencesOA

The first protein component of the Escherichia coli phosphoenolpyruvate: sugar phosphotransferase system (PTS) is the 64-kDa protein enzyme I (EI), which can be phosphorylated by phosphoenolpyruvate (PEP) and carry out phosphotransfer to the acceptor heat-stable protein (HPr). The isolated amino-terminal domain (EIN) of E. coli EI is no longer phosphorylated by PEP but retains the ability to participate in reversible phosphotransfer to HPr. An expression vector was constructed for the production

Materials ChemistryMaterials Science
13
논문|인용수 37·2011
Dephosphorylated NPr of the nitrogen PTS regulates lipid A biosynthesis by direct interaction with LpxD
Hyunjin Kim, Chang‐Ro Lee, Miri Kim, Alan Peterkofsky, Yeong‐Jae Seok
SJR Q2Biochemical and Biophysical Research Communications
GeneticsBiochemistry, Genetics and Molecular Biology
14
논문|인용수 32·2001
Regulation of E. coli glycogen phosphorylase activity by HPr.
Yeong‐Jae Seok, Byoung‐Mo Koo, Melissa Sondej, Alan Peterkofsky
PubMed

Bacteria sense continuous changes in their environment and adapt metabolically to effectively compete with other organisms for limiting nutrients. One system which plays an important part in this adaptation response is the phosphoenol-pyruvate:sugar phosphotransferase system (PTS). Many proteins interact with and are regulated by PTS components in bacteria. Here we review the interaction with and allosteric regulation of Escherichia coli glycogen phosphorylase (GP) activity by the histidine phos

Molecular BiologyBiochemistry, Genetics and Molecular Biology
15
논문|인용수 32·2019
Sugar-mediated regulation of a c-di-GMP phosphodiesterase in Vibrio cholerae
Kyoo Heo, Young‐Ha Park, Kyung‐Ah Lee, Joonwon Kim, Hyeong‐In Ham, Byung‐Gee Kim, Won‐Jae Lee, Yeong‐Jae Seok
SJR Q1Nature CommunicationsOA

Abstract Biofilm formation protects bacteria from stresses including antibiotics and host immune responses. Carbon sources can modulate biofilm formation and host colonization in Vibrio cholerae , but the underlying mechanisms remain unclear. Here, we show that EIIA Glc , a component of the phosphoenolpyruvate (PEP):carbohydrate phosphotransferase system (PTS), regulates the intracellular concentration of the cyclic dinucleotide c-di-GMP, and thus biofilm formation. The availability of preferred

EndocrinologyBiochemistry, Genetics and Molecular Biology

대표 연구 분야

Molecular BiologyGeneticsMaterials ChemistryEndocrinologyBiochemistryPhysiology

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